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Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT5G41190 | AT | Annotation by Michelle Graham. TAIR10: CONTAINS InterPro DOMAIN/s: Nin one binding (NOB1) Zn-ribbon like (InterPro:IPR014881), D-site 20S pre-rRNA nuclease (InterPro:IPR017117); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). | chr5:16487628-16490012 REVERSE LENGTH=602 | SoyBase | E_val: 0 | ISS |
| GO:0006606 | GO-bp | Annotation by Michelle Graham. GO Biological Process: protein import into nucleus | SoyBase | N/A | ISS |
| GO:0008150 | GO-bp | Annotation by Michelle Graham. GO Biological Process: biological process | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0003674 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: molecular function | SoyBase | N/A | ISS |
| KOG2463 | KOG | Predicted RNA-binding protein Nob1p involved in 26S proteasome assembly | JGI | ISS | |
| PTHR12814 | Panther | RNA-BINDING PROTEIN NOB1 | JGI | ISS | |
| PF08772 | PFAM | Nin one binding (NOB1) Zn-ribbon like | JGI | ISS | |
| UniRef100_G7LI13 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: RNA-binding protein NOB1 n=1 Tax=Medicago truncatula RepID=G7LI13_MEDTR | SoyBase | E_val: 0 | ISS |
| UniRef100_I1K6K5 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1K6K5_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma05g37950 not represented in the dataset |
Glyma05g37950 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma08g01650 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.05g206400 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma05g37950.1 sequence type=CDS gene model=Glyma05g37950 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGAGGAAGCTCCGTCTTCAGTTCCGGCGACAGCATCGTGCTGGAGCAACGTGGTCAAGAAGCAACCACCACCACCACCACCGCAGCAGCACACTGAGCGAGTGTTGGTGGAAACCAGCGAATCCCCCAATGCCATCTCCGTTGCCGTCGTGGACGCCAACGCCGTCATCCAATCCGGCGAAAAGCTCCACGGCCTCGCCGACAAGTTCATCTCCATCCCCGAAGTCATGGAGGAAATCCGCGACCCCGTTTCGCGCCACAAACTCTCTTTCCTCCCCTTCACCATCCAAACCATGGAACCCTCCCCCGAATCCATCAACAAAGTTGTTAAATTTGCTAGGGCTACTGGGGACCTACAAACTCTTTCTGATGTTGATATCAAGCTCATAGCTCTGACTTATACTTTGGAGGCTCAAATTCATGGGACAAAACATCTCAGGGAAGCCCCTCCTCCCGTGCAAATGGTCAATGTAAAGAGGTTGCCTGAGAAGGACTTGCCCGGATGGGGTTCTAATGTCCCCAATTTGGATGAGTGGGAGGCATTGGAACAAACCGAGGACGTGTCCAATTCCAATTCCAGGATCCTTCCTTTGCAGGACCTGAGCTTGAACATTGTTTCTCATGATGAGCATTTTGTGGATGGTTCCGTGGAGCGTGCAAGTGAAGCTGATTCAGGGATTCAGGAGGGAGATCAGAATGGTTCGATGAAGCCTAGGAGATATCTGCCGAAGAAAAAGGAGATAAACATCGAGGGGAAGATGATGGTGGCTGATGGAATTGATGCGTCGCAGGGAGAGGTTGATGATAGTGCTGGTGATTGGATGCCAGCTGTCAGTCGGAGTACTCATAGGAGATATCTAAGAAGGAAAGCTAGACGCGAGTATCATGAGTTGTTGTCAAGTAATCAAGATCAGCAACAGTTGGAAGGAAATGTTGATGGTAGTGTTGGTGAAGATGCTAGTGCTTTAAATCAGCCTGCTCATCACAATGAAGAACAACATATTGAAAATGCTGTGACAGAGGATGATAACGTGGTAAAAGAGAACAAAGACAATGAAAGTATCTATGAAATTATGCAGCAAATGAGGCTGCAAGAAGGTTCACTTGAAGTTCTTGATGAGGAAAGTAAACCAAGTTCATCTCCTGAAGAACTCCAGTCAGACAATGCTGGATTGGTGGAAACCGCATCTGATGGCAATGCAACTGTGGTTAATAAACTATGTGACAGTAGGATAGATACAATTGATGGCCAATCAAATCAACTGGAGATTGCAAGCCAGACAAGTGAAGCTGCTGATTTTTCATATGCAGATGATGATGATAGTGACCAAAGTTGGATGGTTAGGTCTTTGTCTGAATCAAGTGTAGCCTGTATAACTGGTGACTTTGCGATGCAAAATGTTCTTCTACAAATGGGTTTGCGCTTGCTGGCACCTGGAGGAACACAGATACACCAGCTGCACAGATGGATACTCAAGTGTCATGCCTGTAACACTGTTACTGCTGAGATTGGGAGGATTTTTTGTCCCAAATGTGGAAATGGTGGCACCTTAAGGAAGGTAGCAGTCACTGTTAATGAAAATGGAATAGTATTAGCTGCCCGTCGACCAAGAGTTACATTACGTGGCACAAAGTTTTCATTGCCTTTACCCCAAGGTGGGAGGGATGCAGTGACAAAGAACCTCATTCTCCGTGAAGATCAACTTCCTCAAAGGGTACTTTATCCTAAAATGAAGAAAGCCAATAAGCAGGATGATGACTTCTTTACACCAGACAGTGTCTTCAGCCACCACATAGACAAGAAAGCTCCTTTCCAGCCTCCTGTAAGGAAAGCAATGGCAGTTTTCAGTGGGAGGAGAAATCCAAATGACAATCACTACTCACGCTCTAAAGCATAA
>Glyma05g37950.1 sequence type=predicted peptide gene model=Glyma05g37950 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MEEAPSSVPATASCWSNVVKKQPPPPPPQQHTERVLVETSESPNAISVAVVDANAVIQSGEKLHGLADKFISIPEVMEEIRDPVSRHKLSFLPFTIQTMEPSPESINKVVKFARATGDLQTLSDVDIKLIALTYTLEAQIHGTKHLREAPPPVQMVNVKRLPEKDLPGWGSNVPNLDEWEALEQTEDVSNSNSRILPLQDLSLNIVSHDEHFVDGSVERASEADSGIQEGDQNGSMKPRRYLPKKKEINIEGKMMVADGIDASQGEVDDSAGDWMPAVSRSTHRRYLRRKARREYHELLSSNQDQQQLEGNVDGSVGEDASALNQPAHHNEEQHIENAVTEDDNVVKENKDNESIYEIMQQMRLQEGSLEVLDEESKPSSSPEELQSDNAGLVETASDGNATVVNKLCDSRIDTIDGQSNQLEIASQTSEAADFSYADDDDSDQSWMVRSLSESSVACITGDFAMQNVLLQMGLRLLAPGGTQIHQLHRWILKCHACNTVTAEIGRIFCPKCGNGGTLRKVAVTVNENGIVLAARRPRVTLRGTKFSLPLPQGGRDAVTKNLILREDQLPQRVLYPKMKKANKQDDDFFTPDSVFSHHIDKKAPFQPPVRKAMAVFSGRRNPNDNHYSRSKA*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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